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Kei Yura
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Research Keywords 【 display / non-display 】
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Computational Bilogy, Bioinformatics, Biophysics, Molecular Evolution, protein-DNA/RNA interactions
Research Pursuits 【 display / non-display 】
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Our laboratory studies the following themes making good use of both calculation ability of a computer owned in the laboratory as well as the infinite spirit and imagination of the students and teachers. The theme group is composed of two axes. The first axis has its base on the biological questions, and it aims to solve the mystery by applying the existing methods. In the case that the existing methods do not fit, we might develop new methods by ourselves. Another axis has its base on the technical questions and aims drastic improvement of the existing computational biology’s methods as well as development of new methods. In fact, single themes have both aspects, but they tend to have a main axis out of two. Each researcher’s preference determines which axis they focus on. Professor has his base on the biological questions and sometimes develops new technologies, if necessary.
Educational Pursuits 【 display / non-display 】
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For the education of computational Biology, The following lectures are delivered. Introduction to Bioinformatics, Computational Biology, Biostatistics, Molecular Structural Biology, Bioinformatics Programing, Advanced Computational Biology, Practice for Computational Biology, Advanced Information Science for Biology, Practice for Information Science for Biology, Predictive Biology, Academic Presentation in English, Career Development, Biophysics.
Academic 【 display / non-display 】
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Waseda University, Department of Science and Engineering, Applied Physics, University, 1988.03, 卒業, Japan
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Waseda University Graduate School, School of Science and Engineering, Physics and Applied Physics, Graduate School(Master's Course), 1990.03, 修了, Japan
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Nagoya University Graduate School, Faculty of Science, Department of Biology, Graduate School(Doctor's Course), 1993.03, 単位取得満期退学, Japan
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名古屋大学, その他, 1999.03, 論文博士, Japan
Degree 【 display / non-display 】
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工学学士, 早稲田大学, 1988.03
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理学修士, 早稲田大学大学院, 1990.03
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PhD in Science, 1999.03
Campus Career 【 display / non-display 】
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Graduate School of Humanities and Sciences, Research Organization, the Core Section The Natural/Applied Sciences Division, Professor, 2008.04 - 2015.03
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Faculty of Core Research Natural Sciences Division, Professor, 2015.04 -
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Graduate School of Humanities and Sciences, Education Organization, Doctral Program Life Sciences, Professor, 2008.04 - 2015.03
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Graduate School of Humanities and Sciences, Education Organization, Doctral Program Life Sciences, Professor, 2015.04 -
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Graduate School of Humanities and Sciences, Education Organization, Master's Program Life Sciences, Professor, 2008.04 - 2015.03
External Career 【 display / non-display 】
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National Institute of Genetics, Project Professor, 2013.10 - 2017.03
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Quantum and Radiological Science and Technology, 2016.04 -
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Tokyo Metropolitan Institute of Medical Science, 2016.04 -
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Waseda University School of Advanced Science and Engineering, Professor, 2017.04 -
Research Field 【 display / non-display 】
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Life Science / Life Science / Biophysics
Books 【 display / non-display 】
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生命起源の事典
原始遺伝子群の統合/ゲノムの起源, 朝倉書店, 2024.05, 由良敬, 薮田 ひかる・川村 邦男・赤沼 哲史・木賀 大介・根本 直人・古川 善博・横堀 伸一, Scholarly book, 2
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最先端コオロギ学 ー世界初！ 新しい生物学がここにあるー
日本のムーンショットプロジェクト, 北隆館, 2022.04, 由良敬, 野地 澄晴, Textbook, survey, introduction, 19-20, 口絵(6)
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実験医学別冊 創薬研究のための相互作用解析パーフェクト
６）創薬等に役立つインターネット上のデータベース, 羊土社, 2021.12, 由良 敬、鈴木 博文、栗栖 源嗣、川端 猛、木下 賢吾、 白井 剛、土方 敦司、田之倉 優, 津田 浩平、前仲 勝実, Scholarly book, 269-283
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パリティ ２０１３年６月号
Intrinsically disordered proteins, Physics Today 68(8), 丸善出版株式会社, American Institute of Physics, 2013.06, 2012, 由良敬, Peter Tompa, Kyou-Hoon Han, Scholarly book, 45-47
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進化分子工学─高速分子進化によるタンパク質・核酸の開発─
第4章 タンパク質進化の機構, エヌ・ティー・エス, 2013, 由良 敬、高井美智留, 伏見 譲, Report, 61-70
Papers 【 display / non-display 】
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Identification of novel Golgi-localized putative glycosyltransferase protein in Arabidopsis thaliana
Plant Biotechnology, , vol.41(1)(p.35 - 44), 2024.03, Natalia Rzepecka, Yoko Ito, Kei Yura, Emi Ito, Tomohiro Uemura, Original, Research paper (scientific journal), Coauthor
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Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies
Biophysical Journal, , vol.123(6)(p.681 - 692), 2024.01, Mayu Shibata, Xingcheng Lin, José N. Onuchic, Kei Yura, Ryan R. Chen, Original, Research paper (scientific journal), Coauthor
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シングルセル/微小組織マルチオミクス解析
実験医学, Yodosha, , vol.42(2)(p.199 - 204), 2024.01, 由良敬、松永浩子、細川正人、和泉自泰、村松知成、福永津嵩、浜田道昭、馬場健史、竹山春子, Survey, Research paper (scientific journal), Capital Author
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Complete mitochondrial genome sequences of two ground crickets, Dianemobius fascipes nigrofasciatus and Polionemobius taprobanensis (Orthoptera: Grylloidea: trigonidiidae)
Mitochondrial DNA Part B, , vol.8(12)(p.1311 - 1315), 2023.12, Kohyoh Murata, Kosuke Kataoka, Ryuto Sanno, Kazuhiro Satomura, Atsushi Ogura, Toru Asahi, Kei Yura, Takeshi Suzuki, Original, Research paper (scientific journal), Coauthor
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ThermusQ: Toward the cell simulation platform for Thermus thermophilus
Journal of General and Applied Microbiology, Applied Microbiology, Molecular and Cellular Biosciences Research Foundation, , vol.69(2)(p.59 - 67), 2023.09, Atsushi Hijikata, Tairo Oshima, Kei Yura, Yoshitaka Bessho, Original, Research paper (scientific journal), Coauthor
Presentations 【 display / non-display 】
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Dark Enzymes Dark Proteinsに光を当てるために
由良敬, Domestic, Oral presentation (invited, special), 2023.12, 2023/12/272023/12/27, 第２３回名古屋大学遺伝子実験施設公開セミナー, 名古屋大学オークマ工作機械工学館オークマホール, 名古屋大学遺伝子実験施設, Invited, Main Speaker
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コオロギ上科におけるタウリン生合成経路の探索
2. 鈴木愛菜, Domestic, Poster presentation, 2023.12, 2023/12/062023/12/08, 第46回日本分子生物学会年会, 神戸ポートアイランド, 日本分子生物学会, Not Invited, Coauthor
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大脳皮質第５層錐体細胞におけるシナプス入力の時空間的クラスタリングと入力同時性検出機能の関係解析
徳田椋子, Domestic, Poster presentation, 2023.12, 2023/12/062023/12/08, 第46回日本分子生物学会年会, 神戸ポートアイランド, 日本分子生物学会, Not Invited, Coauthor
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コオロギ科の染色体レベル全ゲノム塩基配列に基づく性分化機構の解明
三野流斗, Domestic, Poster presentation, 2023.12, 2023/12/062023/12/08, 第46回日本分子生物学会年会, 神戸ポートアイランド, 日本分子生物学会, Not Invited, Coauthor
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Data integration platform for extracting new knowledge from Thermus thermophilus
Kei Yura, International, Oral presentation (invited, special), 2023.11, 2023/10/302023/11/02, 第９６回日本生化学会大会, 福岡国際会議場, 日本生化学会, Invited, Main Speaker
Prize for Research Activities 【 display / non-display 】
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BIOPHYSICS論文賞
日本生物物理学会, Shoichi Metsugi, “Sequence analysis of the gliding protein Gli349 in Mycoplasma mobile” BIOPHYSICS vol. 1, pp.33-43 (2005), 2013.10, Domestic
Receipt of outside funds (Education, Research, Contribution to Society and industry-academia[government] collaboration) 【 display / non-display 】
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Grant-in-Aid for Scientific Research(C)2022, 10Thousand yen
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ムーンショット型農林水産研究開発事業, Kei Yura, 2022
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Grant-in-Aid for Scientific Research(C)2021
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革新的先端研究開発支援事業2021
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Grant-in-Aid for Scientific Research(C)2021, 0Thousand yen
Contributions as an officer, member, etc., of an academic society 【 display / non-display 】
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2005.01 - 2008.12，Committee Member, Domestic
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2005.01 - 2008.12，Committee Member, International
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2011.01 - 2012.12，the Vice-Chairperson, Domestic
Open lectures; lectures, courses, and seminars; guest lectures; etc. 【 display / non-display 】
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「データ処理」についての特別講義と演習
2023.08, 千葉高校, 本講義では、生物学の研究現場でよく遭遇する二種データの違いを明らかにするために必要となる、統計的手法の基礎知識とその実践適用力の習得をめざします。手法の背景を説明した上で、コンピュータソフトウエアＲを利用しながら、ヒラドツツジの葉の大きさを比較します。実際に計算をすることで、研究現場で使える技術を身につけます。 , 千葉高校, Visiting lecture
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「データ処理」についての特別講義と演習
2023.03, 千葉高校, 本講義では、生物学の研究現場でよく遭遇する二種データの違いを明らかにするために必要となる、統計的手法の基礎知識とその実践適用力の習得をめざします。手法の背景を説明した上で、コンピュータソフトウエアＲを利用しながら、ヒラドツツジの葉の大きさを比較します。実際に計算をすることで、研究現場で使える技術を身につけます。 , 千葉高校, Visiting lecture
Media coverage, appearances, commentary, etc. 【 display / non-display 】
- 日本経済新聞
2016.06.22, 日本経済新聞社
- 技術総合誌 OHM
2012.06.12
- 生命誌年刊号「編む」
2012.03.01
- 日経サイエンス
2009.11.01
- 文芸広場
2008.09.01