Research Keywords 【 display / non-display 】

  • Computational Bilogy, Bioinformatics, Biophysics, Molecular Evolution, protein-DNA/RNA interactions

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Research Pursuits 【 display / non-display 】

  • Our laboratory studies the following themes making good use of both calculation ability of a computer owned in the laboratory as well as the infinite spirit and imagination of the students and teachers. The theme group is composed of two axes. The first axis has its base on the biological questions, and it aims to solve the mystery by applying the existing methods. In the case that the existing methods do not fit, we might develop new methods by ourselves. Another axis has its base on the technical questions and aims drastic improvement of the existing computational biology’s methods as well as development of new methods. In fact, single themes have both aspects, but they tend to have a main axis out of two. Each researcher’s preference determines which axis they focus on. Professor has his base on the biological questions and sometimes develops new technologies, if necessary.

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Educational Pursuits 【 display / non-display 】

  • For the education of computational Biology, The following lectures are delivered. Introduction to Bioinformatics, Computational Biology, Biostatistics, Molecular Structural Biology, Bioinformatics Programing, Advanced Computational Biology, Practice for Computational Biology, Advanced Information Science for Biology, Practice for Information Science for Biology, Predictive Biology, Academic Presentation in English, Career Development, Biophysics.

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Academic 【 display / non-display 】

  • Waseda University, Department of Science and Engineering, Applied Physics, University, 1988.03, 卒業, Japan

  • Waseda University Graduate School, School of Science and Engineering, Physics and Applied Physics, Graduate School(Master's Course), 1990.03, 修了, Japan

  • Nagoya University Graduate School, Faculty of Science, Department of Biology, Graduate School(Doctor's Course), 1993.03, 単位取得満期退学, Japan

  • 名古屋大学, その他, 1999.03, 論文博士, Japan

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Degree 【 display / non-display 】

  • 工学学士, 早稲田大学, 1988.03

  • 理学修士, 早稲田大学大学院, 1990.03

  • PhD in Science, 1999.03

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Campus Career 【 display / non-display 】

  • Graduate School of Humanities and Sciences, Research Organization, the Core Section The Natural/Applied Sciences Division, Professor, 2008.04 - 2015.03

  • Faculty of Core Research Natural Sciences Division, Professor, 2015.04 -

  • Graduate School of Humanities and Sciences, Education Organization, Doctral Program Life Sciences, Professor, 2008.04 - 2015.03

  • Graduate School of Humanities and Sciences, Education Organization, Doctral Program Life Sciences, Professor, 2015.04 -

  • Graduate School of Humanities and Sciences, Education Organization, Master's Program Life Sciences, Professor, 2008.04 - 2015.03

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External Career 【 display / non-display 】

  • National Institute of Genetics, Project Professor, 2013.10 - 2017.03

  • Quantum and Radiological Science and Technology, 2016.04 -

  • Tokyo Metropolitan Institute of Medical Science, 2016.04 -

  • Waseda University School of Advanced Science and Engineering, Professor, 2017.04 -

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Research Field 【 display / non-display 】

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Books 【 display / non-display 】

  • 最先端コオロギ学　ー世界初！　新しい生物学がここにあるー

    日本のムーンショットプロジェクト, 北隆館, 2022.04, 由良敬, 野地　澄晴, Textbook, survey, introduction, 19-20, 口絵(6)

  • 実験医学別冊　創薬研究のための相互作用解析パーフェクト

    ６）創薬等に役立つインターネット上のデータベース, 羊土社, 2021.12, 由良　敬、鈴木　博文、栗栖　源嗣、川端　猛、木下　賢吾、 白井　剛、土方　敦司、田之倉　優, 津田　浩平、前仲　勝実, Scholarly book, 269-283

  • パリティ　２０１３年６月号

    Intrinsically disordered proteins, Physics Today 68(8), 丸善出版株式会社, American Institute of Physics, 2013.06, 2012, 由良敬, Peter Tompa, Kyou-Hoon Han, Scholarly book, 45-47

  • 進化分子工学─高速分子進化によるタンパク質・核酸の開発─

    第4章　タンパク質進化の機構, エヌ・ティー・エス, 2013, 由良　敬、高井美智留, 伏見　譲, Report, 61-70

  • ヘンダーソン生物学用語辞典

    H, I, J, K, Q, S, Henderson's Dictionary of Biology, Ohmsha, Pearson Education Limited, 2012.09, 2011, 木田満里代、嶌田智、関啓子、千葉和義、服田昌之、宮本康則、室伏きみ子、室伏擴、由良敬、市原健介, 生物学用語辞典編集委員会, Eleanor Lawrence, Dictionary, encyclopedia, 116ページ

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Papers 【 display / non-display 】

  • A trial of web-based method to teach impact of genome variation on protein structures at high school

    Natural Science Report, Ochanomizu University, Ochanomizu University, , vol.73(1-2)(p.13 - 21), 2023.03, Saki Katagiri, Mayu Shibata, Misae Kudo, Kei Yura, Original, Research paper (scientific journal), Coauthor

  • PGLN: A newly identified amino phosphoglycolipid species in Thermus thermophilus HB8

    Biochemistry and Biophysics Reports, Elsevier B.V., , vol.32(p.101377 - ), 2022.12, Naoki Nemoto, Masahiko Kawaguchi, Kei Yura, Haruo Shimada, Yoshitaka Bessho, Original, Research paper (scientific journal), Coauthor

  • Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral

    Microbiome, Springer Nature, , vol.10(p.220 - ), 2022.12, Keigo Ide, Yohei Nishikawa, Toru Maruyama, Yuko Tsukada, Masato Kogawa, Hiroki Takeda, Haruka Ito, Ryota Wagatsuma, Rimi Miyaoka, Yoshikatsu Nakano, Koji Kinjo, Michihiro Ito, Masahito Hosokawa, Kei Yura, Shoichiro Suda, Haruko Takeyama, Original, Research paper (scientific journal), Coauthor

  • O3C Glass-Class: A machine learning framework for prognostic prediction of ovarian clear cell carcinoma

    Bioinformatics and Biology Insights, SAGE Journal, , vol.16(p.11779322221134312 - ), 2022.11, Ryo Yokomizo, Tiago J.S. Lopes, Nagisa Takashima, Sou Hirose, Ayako Kawabata, Masataka Takenaka, Yasushi Iida, Nozomu Yanaihara, Kei Yura, Haruhiko Sago, Aikou Okamoto, Akihiro Umezawa, Original, Research paper (scientific journal), Coauthor

  • Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawater

    ISME Communications, Springer Nature, , vol.2(1)(p.92 - ), 2022.09, Yohei Nishikawa, Masato Kogawa, Masahito Hosokawa, Ryota Wagatsuma, Katsuhiko Mineta, Kai Takahashi, Keigo Ide, Kei Yura, Hayedeh Behzad, Takashi Gojobori, Haruko Takeyama, Original, Research paper (scientific journal), Coauthor

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Presentations 【 display / non-display 】

  • 1細胞/微小組織マルチオミックスのオールインワン解析による生命科学研究支援

    由良敬, Domestic, Oral presentation (invited, special), 2022.10, 2022/10/252022/10/27, CBI学会2022年大会, タワーホール船堀、東京, CBI学会, Invited, Main Speaker

  • 生命科学データベースを接続したVaProSによるデータ解析

    由良　敬, Domestic, 2018.11, , 第41回日本分子生物学会年会, パシフィコ横浜会議センター、神奈川、日本, 日本分子生物学会, Invited, Main Speaker

  • ホタルイカのゲノムデータ解析による発光タンパク質の推定

    川井　優里、舟橋　実里、由良　敬, Domestic, 2018.10, , 第一回イカ・タコ研究会, 島根大学　隠岐海浜実験所, イカ・タコ研究会, Not Invited, Main Speaker

  • 創薬等ライフサイエンス研究を促進する研究支援とデータサイエンス

    由良　敬, Domestic, 2018.10, , CBI学会2018年度大会, タワーホール船堀、東京、日本, CBI学会, Invited, Main Speaker

  • 生命科学データベースの接続をめざすVaProSから見えてくるあらたな知見

    由良　敬, Domestic, 2018.09, , 第56回日本生物物理学会, 岡山大学津山キャンパス、岡山、日本, 日本生物物理学会, Invited, Main Speaker

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Prize for Research Activities 【 display / non-display 】

  • BIOPHYSICS論文賞

    日本生物物理学会, Shoichi Metsugi, “Sequence analysis of the gliding protein Gli349 in Mycoplasma mobile” BIOPHYSICS vol. 1, pp.33-43 (2005), 2013.10, Domestic

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Receipt of outside funds (Education, Research, Contribution to Society and industry-academia[government] collaboration) 【 display / non-display 】

  • Grant-in-Aid for Scientific Research(C)2022, 10Thousand yen

  • ムーンショット型農林水産研究開発事業, Kei Yura, 2022

  • Grant-in-Aid for Scientific Research(C)2021

  • 革新的先端研究開発支援事業2021

  • Grant-in-Aid for Scientific Research(C)2021, 0Thousand yen

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Contributions as an officer, member, etc., of an academic society 【 display / non-display 】

  • 2005.01 - 2008.12，Committee Member, Domestic

  • 2005.01 - 2008.12，Committee Member, International

  • 2011.01 - 2012.12，the Vice-Chairperson, Domestic

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Open lectures; lectures, courses, and seminars; guest lectures; etc. 【 display / non-display 】

  • 「データ処理」についての特別講義と演習

    2023.03, 千葉高校, 本講義では、生物学の研究現場でよく遭遇する二種データの違いを明らかにするために必要となる、統計的手法の基礎知識とその実践適用力の習得をめざします。手法の背景を説明した上で、コンピュータソフトウエアＲを利用しながら、ヒラドツツジの葉の大きさを比較します。実際に計算をすることで、研究現場で使える技術を身につけます。 , 千葉高校, Visiting lecture

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Media coverage, appearances, commentary, etc. 【 display / non-display 】

  • 日本経済新聞

    2016.06.22, 日本経済新聞社

  • 技術総合誌 OHM

    2012.06.12

  • 生命誌年刊号「編む」

    2012.03.01

  • 日経サイエンス

    2009.11.01

  • 文芸広場

    2008.09.01

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