Research Keywords 【 display / non-display 】

  • Computational Bilogy, Bioinformatics, Biophysics, Molecular Evolution, protein-DNA/RNA interactions

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Research Pursuits 【 display / non-display 】

  • Our laboratory studies the following themes making good use of both calculation ability of a computer owned in the laboratory as well as the infinite spirit and imagination of the students and teachers. The theme group is composed of two axes. The first axis has its base on the biological questions, and it aims to solve the mystery by applying the existing methods. In the case that the existing methods do not fit, we might develop new methods by ourselves. Another axis has its base on the technical questions and aims drastic improvement of the existing computational biology’s methods as well as development of new methods. In fact, single themes have both aspects, but they tend to have a main axis out of two. Each researcher’s preference determines which axis they focus on. Professor has his base on the biological questions and sometimes develops new technologies, if necessary.

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Educational Pursuits 【 display / non-display 】

  • For the education of computational Biology, The following lectures are delivered. Introduction to Bioinformatics, Computational Biology, Biostatistics, Molecular Structural Biology, Bioinformatics Programing, Advanced Computational Biology, Practice for Computational Biology, Advanced Information Science for Biology, Practice for Information Science for Biology, Predictive Biology, Academic Presentation in English, Career Development, Biophysics.

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Academic 【 display / non-display 】

  • Waseda University, Department of Science and Engineering, Applied Physics, University, 1988/03, Graduated, JAPAN

  • Waseda University Graduate School, School of Science and Engineering, Physics and Applied Physics, Graduate School(Master's Course), 1990/03, Completed, JAPAN

  • Nagoya University Graduate School, Faculty of Science, Department of Biology, Graduate School(Doctor's Course), 1993/03, Accomplished credits for doctoral program, JAPAN

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Degree 【 display / non-display 】

  • PhD in Science, 1999/03

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Campus Career 【 display / non-display 】

  • Graduate School of Humanities and Sciences, Research Organization, the Core Section The Natural/Applied Sciences Division, Professor

  • Faculty of Core Research Natural Science Division, Professor

  • Graduate School of Humanities and Sciences, Education Organization, Doctral Program Life Sciences, Professor

  • Graduate School of Humanities and Sciences, Education Organization, Doctral Program Life Sciences, Professor

  • Graduate School of Humanities and Sciences, Education Organization, Master's Program Life Sciences, Professor

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External Career 【 display / non-display 】

  • , Research Associate, 1993.04 - 1996.03

  • , Research Associate, 1996.04 - 2001.12

  • National Institute of Genetics, Project Professor, 2013.10 - 2017.03

  • Waseda University School of Advanced Science and Engineering, Professor, 2017.04 -

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Research Field 【 display / non-display 】

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Books 【 display / non-display 】

  • Advanced Cricketology

    日本のムーンショットプロジェクト, Hokuryukan, 2022.04, Kei Yura, Sumihare Noji, Textbook, 19-20, 口絵(6)

  • 実験医学別冊　創薬研究のための相互作用解析パーフェクト

    ６）創薬等に役立つインターネット上のデータベース, YODOSHA, 2021.12, 由良　敬、鈴木　博文、栗栖　源嗣、川端　猛、木下　賢吾、 白井　剛、土方　敦司、田之倉　優, 津田　浩平、前仲　勝実, Research Book, 269-283

  • パリティ　２０１３年６月号

    Intrinsically disordered proteins, Physics Today 68(8), Maruzen, American Institute of Physics, 2013.06, 2012, Kei Yura, Peter Tompa, Kyou-Hoon Han, Research Book, 45-47

  • ヘンダーソン生物学用語辞典

    H, I, J, K, Q, S, Henderson's Dictionary of Biology, Ohmsha, Pearson Education Limited, 2012.09, 2011, 木田満里代、嶌田智、関啓子、千葉和義、服田昌之、宮本康則、室伏きみ子、室伏擴、由良敬、市原健介, 生物学用語辞典編集委員会, Eleanor Lawrence, Dictionary, 116ページ

  • タンパク質の立体構造入門：基礎から構造バイオインフォマティクスへ

    第１章 タンパク質構造の基礎, 講談社, 2010.12, Kei Yura, 藤博幸, Textbook, 1-17

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Papers 【 display / non-display 】

  • Co-expression network analysis of environmental canalization in the ascidian Ciona

    BMC Ecology and Evolution, vol.22(p.53), 2022.04, Atsuko Sato, Gina M Oba, Nathanael Aubert-Kato, Kei Yura, John Bishop, Original, Research paper (scientific journal), Coauthor

  • Single-cell metabolite detection and genomics reveals uncultivated talented producer

    PNAS nexus, vol.1(1)(p.pgab007), 2022.03, Masato Kogawa, Rimi Miyaoka, Franziska Hemmerling, Masahiro Ando, Kei Yura, Keigo Ide, Yohei Nishikawa, Masahito Hosokawa, Yuji Ise, Jackson K B Cahn, Kentaro Takada, Shigeki Matsunaga, Tetsushi Mori, Jörn Piel, Haruko Takeyama , Original, Research paper (scientific journal), Coauthor

  • Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of 3D macromolecular structural data

    Protein Science, vol.31(1)(p.173 - 186), 2022.01, Gert-Jan Bekker, Masashi Yokochi, Hirofumi Suzuki, Yasuyo Ikegawa, Takeshi Iwata, Takahiro Kudo, Kei Yura, Toshimichi Fujiwara, Takeshi Kawabata, Genji Kurisu, Original, Research paper (scientific journal), Capital Author

  • Puromycin-based purification of cells with high expression of the cytochrome P450 CYP3A4 gene from a patient with drug-induced liver infury (DILI)

    Stem Cell Research & Therapy, vol.13(p.6), 2022.01, Shoko Miyata, Noriaki Saku, Saeko Akiyama, Palaksha Kanive Javaregowda, Kenta Ite, Nagisa Takashima, Masashi Toyoda, Kei Yura, Tohru Kimura, Hiroshi Nishina, Atsuko Nakazawa, Mureo Kasahara, Hidenori Nonaka, Tohru Kiyono, Akihiro Umezawa, Original, Research paper (scientific journal), Coauthor

  • CFI 25 subunit of cleavage factor I is important for maintaining the diversity of 3′ UTR lengths in Arabidopsis thaliana (L.) Heynh

    Plant and Cell Physiology, vol.63(3)(p.369 - 383), 2022.01, Xiaojuan Zhang, Mika Nomoto, Marta Garcia-León, Naoki Takahashi, Mariko Kato, Kei Yura, Masaaki Umeda, Vicente Rubio, Yasuomi Tada, Tsuyoshi Furumoto, Takashi Aoyama, Tomohiko Tsuge, Original, Research paper (scientific journal), Coauthor

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Presentations 【 display / non-display 】

  • The effect of variation of nucleotides on protein three-dimensional structures and on their function-a couple of case studies

    YURA Kei, International, 2017.09, International Symposium on Genome Science, Vietnam Academy of Science and Technology ,Hanoi,Vietnam, Vietnam Academy of Science and Technology ,Hanoi,Vietnam, Not Invited, Main Speaker

  • プリン生合成系の成り立ち—全酵素の俯瞰的な構造比較から—

    塩生　真史、郷　通子、由良　敬 , Domestic, 2016.12, 第39 回日本分子生物学会年会, Yokohama, 日本分子生物学会, Invited, Main Speaker

  • タンパク質複合体界面における「からまった」構造は何を意味するのか？

    YURA Kei, NAKAGAWA Mariko, HAYWARD Steven, Domestic, 2016.09, 日本生化学会大会, Sendai, 日本生化学会, Invited, Main Speaker

  • ラン藻プロテオームの立体構造は どこまでわかったか？

    IWASAKI Ai, YURA Kei, Domestic, 2016.06, ラン藻ゲノム交流会2016, 東京大学駒場キャンパス、東京, ラン藻ゲノム交流会, Invited, Main Speaker

  • 配列から機能まで、統合解析のためのVapRoS

    由良　敬, Domestic, 2016.03, 日本農芸化学会2016年度大会, 札幌, 日本農芸化学会, Invited, Main Speaker

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Prize for Research Activities 【 display / non-display 】

  • BIOPHYSICS論文賞

    Shoichi Metsugi, “Sequence analysis of the gliding protein Gli349 in Mycoplasma mobile” BIOPHYSICS vol. 1, pp.33-43 (2005), 2013.10, Domestic

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