Papers - YURA Kei

1. Identification of novel Golgi-localized putative glycosyltransferase protein in Arabidopsis thaliana

   Plant Biotechnology, , vol.41(1)(p.35 - 44), 2024.03, Natalia Rzepecka, Yoko Ito, Kei Yura, Emi Ito, Tomohiro Uemura, Original, Research paper (scientific journal), Coauthor

2. Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies

   Biophysical Journal, , vol.123(6)(p.681 - 692), 2024.01, Mayu Shibata, Xingcheng Lin, José N. Onuchic, Kei Yura, Ryan R. Chen, Original, Research paper (scientific journal), Coauthor

3. シングルセル/微小組織マルチオミクス解析

   実験医学, Yodosha, , vol.42(2)(p.199 - 204), 2024.01, 由良敬、松永浩子、細川正人、和泉自泰、村松知成、福永津嵩、浜田道昭、馬場健史、竹山春子, Survey, Research paper (scientific journal), Capital Author

4. Complete mitochondrial genome sequences of two ground crickets, Dianemobius fascipes nigrofasciatus and Polionemobius taprobanensis (Orthoptera: Grylloidea: trigonidiidae)

   Mitochondrial DNA Part B, , vol.8(12)(p.1311 - 1315), 2023.12, Kohyoh Murata, Kosuke Kataoka, Ryuto Sanno, Kazuhiro Satomura, Atsushi Ogura, Toru Asahi, Kei Yura, Takeshi Suzuki, Original, Research paper (scientific journal), Coauthor

5. ThermusQ: Toward the cell simulation platform for Thermus thermophilus

   Journal of General and Applied Microbiology, Applied Microbiology, Molecular and Cellular Biosciences Research Foundation, , vol.69(2)(p.59 - 67), 2023.09, Atsushi Hijikata, Tairo Oshima, Kei Yura, Yoshitaka Bessho, Original, Research paper (scientific journal), Coauthor

6. Isolation and genomic analysis of a type IV pili-independent Thermus thermophilus phage, φMN1 from a Japanese hot spring

   Journal of General and Applied Microbiology, Applied Microbiology, Molecular and Cellular Biosciences Research Foundation, , vol.69(2)(p.117 - 124), 2023.07, Masatada Tamakoshi, Atsushi Hijikata, Kei Yura, Kenshiro Oshima, Hidehiro Toh, Kaoru Mitsuoka, Tairo Oshima, Yoshitaka Bessho, Original, Research paper (scientific journal), Coauthor

7. Whole genome analyses for c-type cytochromes associated with respiratory chains in the extreme thermophile, Thermus thermophilus

   Journal of General and Applied Microbiology, Applied Microbiology, Molecular and Cellular Biosciences Research Foundation, , vol.69(2)(p.68 - 78), 2023.06, Koyu Hon-nami, Atsushi Hijikata, Kei Yura, Yoshitaka Bessho, Original, Research paper (scientific journal), Coauthor

8. A trial of web-based method to teach impact of genome variation on protein structures at high school

   Natural Science Report, Ochanomizu University, Ochanomizu University, , vol.73(1-2)(p.13 - 21), 2023.03, Saki Katagiri, Mayu Shibata, Misae Kudo, Kei Yura, Original, Research paper (scientific journal), Coauthor

9. PGLN: A newly identified amino phosphoglycolipid species in Thermus thermophilus HB8

   Biochemistry and Biophysics Reports, Elsevier B.V., , vol.32(p.101377 - ), 2022.12, Naoki Nemoto, Masahiko Kawaguchi, Kei Yura, Haruo Shimada, Yoshitaka Bessho, Original, Research paper (scientific journal), Coauthor

10. Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral

    Microbiome, Springer Nature, , vol.10(p.220 - ), 2022.12, Keigo Ide, Yohei Nishikawa, Toru Maruyama, Yuko Tsukada, Masato Kogawa, Hiroki Takeda, Haruka Ito, Ryota Wagatsuma, Rimi Miyaoka, Yoshikatsu Nakano, Koji Kinjo, Michihiro Ito, Masahito Hosokawa, Kei Yura, Shoichiro Suda, Haruko Takeyama, Original, Research paper (scientific journal), Coauthor

11. O3C Glass-Class: A machine learning framework for prognostic prediction of ovarian clear cell carcinoma

    Bioinformatics and Biology Insights, SAGE Journal, , vol.16(p.11779322221134312 - ), 2022.11, Ryo Yokomizo, Tiago J.S. Lopes, Nagisa Takashima, Sou Hirose, Ayako Kawabata, Masataka Takenaka, Yasushi Iida, Nozomu Yanaihara, Kei Yura, Haruhiko Sago, Aikou Okamoto, Akihiro Umezawa, Original, Research paper (scientific journal), Coauthor

12. Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawater

    ISME Communications, Springer Nature, , vol.2(1)(p.92 - ), 2022.09, Yohei Nishikawa, Masato Kogawa, Masahito Hosokawa, Ryota Wagatsuma, Katsuhiko Mineta, Kai Takahashi, Keigo Ide, Kei Yura, Hayedeh Behzad, Takashi Gojobori, Haruko Takeyama, Original, Research paper (scientific journal), Coauthor

13. Computational study of the impact of nucleotide variations on highly conserved proteins: In the case of actin

    Biophysics and Physicobiology, Biophysical Society of Japan, , vol.19(1)(p.e190025 - ), 2022.07, Ha T. T. Duong, Hirofumi Suzuki, Saki Katagiri, Mayu Shibata, Misae Arai, Kei Yura (, Original, Research paper (scientific journal), Coauthor

14. 日本語版健常者病気認知尺度:遺伝性疾患への適用の検討

    日本遺伝カウンセリング学会誌, , vol.43(1)(p.47 - 52), 2022.05, 甲畑(照井)宏子・由良　敬・池田まさみ, Original, Research paper (scientific journal), Coauthor

15. Co-expression network analysis of environmental canalization in the ascidian Ciona

    BMC Ecology and Evolution, , vol.22(p.53), 2022.04, Atsuko Sato, Gina M Oba, Nathanael Aubert-Kato, Kei Yura, John Bishop, Original, Research paper (scientific journal), Coauthor

16. Single-cell metabolite detection and genomics reveals uncultivated talented producer

    PNAS nexus, , vol.1(1)(p.pgab007), 2022.03, Masato Kogawa, Rimi Miyaoka, Franziska Hemmerling, Masahiro Ando, Kei Yura, Keigo Ide, Yohei Nishikawa, Masahito Hosokawa, Yuji Ise, Jackson K B Cahn, Kentaro Takada, Shigeki Matsunaga, Tetsushi Mori, Jörn Piel, Haruko Takeyama , Original, Research paper (scientific journal), Coauthor

17. Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of 3D macromolecular structural data

    Protein Science, , vol.31(1)(p.173 - 186), 2022.01, Gert-Jan Bekker, Masashi Yokochi, Hirofumi Suzuki, Yasuyo Ikegawa, Takeshi Iwata, Takahiro Kudo, Kei Yura, Toshimichi Fujiwara, Takeshi Kawabata, Genji Kurisu, Original, Research paper (scientific journal), Capital Author

18. CFI 25 subunit of cleavage factor I is important for maintaining the diversity of 3′ UTR lengths in Arabidopsis thaliana (L.) Heynh

    Plant and Cell Physiology, , vol.63(3)(p.369 - 383), 2022.01, Xiaojuan Zhang, Mika Nomoto, Marta Garcia-León, Naoki Takahashi, Mariko Kato, Kei Yura, Masaaki Umeda, Vicente Rubio, Yasuomi Tada, Tsuyoshi Furumoto, Takashi Aoyama, Tomohiko Tsuge, Original, Research paper (scientific journal), Coauthor

19. Dissecting Cricket Genomes for Advancement of Entomology and Entomophagy

    Biophysical Reviews, , vol.14(p.75 - 97), 2022.01, Kosuke Kataoka, Yuki Togawa, Ryuto Sanno, Toru Asahi, Kei Yura, Survey, Research paper (scientific journal), Coauthor

20. Puromycin-based purification of cells with high expression of the cytochrome P450 CYP3A4 gene from a patient with drug-induced liver infury (DILI)

    Stem Cell Research & Therapy, , vol.13(p.6), 2022.01, Shoko Miyata, Noriaki Saku, Saeko Akiyama, Palaksha Kanive Javaregowda, Kenta Ite, Nagisa Takashima, Masashi Toyoda, Kei Yura, Tohru Kimura, Hiroshi Nishina, Atsuko Nakazawa, Mureo Kasahara, Hidenori Nonaka, Tohru Kiyono, Akihiro Umezawa, Original, Research paper (scientific journal), Coauthor